Condor Tutorial
First
EuroGlobus Workshop
June 2001
Tutorial Outline
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Overview |
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The Story of Frieda, the Scientist |
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Using Condor to manage jobs |
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Using Condor to manage resources |
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Condor Architecture and Mechanisms |
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Condor on the Grid |
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Flocking |
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Condor-G |
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Case Study: DTF |
Tutorial Outline
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Overview: What is Condor |
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What does Condor do? |
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What is Condor good for? |
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What kind of results can I expect? |
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The Condor Project (Established
‘85)
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Distributed High Throughput Computing research
performed by a team of ~25 faculty, full time staff and students who: |
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face software engineering challenges in
a distributed UNIX/Linux/NT environment, |
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are involved in national and
international collaborations, |
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actively interact with academic and
commercial users, |
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maintain and support a large
distributed production environment, |
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and educate and train students. |
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Funding – US Govt. (DoD, DoE, NASA,
NSF), |
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AT&T, IBM, INTEL, Microsoft
UW-Madison |
What is High-Throughput
Computing?
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High-performance: CPU cycles/second
under ideal circumstances. |
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“How fast can I run simulation X on
this machine?” |
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High-throughput: CPU cycles/day (week,
month, year?) under non-ideal circumstances. |
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“How many times can I run simulation X
in the next month using all available machines?” |
What is Condor?
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Condor converts collections of
distributively owned workstations and dedicated clusters into a distributed high-throughput
computing facility. |
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Condor uses ClassAd Matchmaking to make
sure that everyone is happy. |
The Condor System
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Unix and NT |
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Operational since 1986 |
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Manages more than 1300 CPUs at
UW-Madison |
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Software available free on the web |
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More than 150 Condor installations
worldwide in academia and industry |
Some HTC Challenges
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Condor does whatever it takes to run
your jobs, even if some machines… |
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Crash (or are disconnected) |
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Run out of disk space |
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Don’t have your software installed |
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Are frequently needed by others |
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Are far away & managed by someone
else |
What is ClassAd Matchmaking?
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Condor uses ClassAd Matchmaking to make
sure that work gets done within the constraints of both users and owners. |
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Users (jobs) have constraints: |
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“I need an Alpha with 256 MB RAM” |
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Owners (machines) have constraints: |
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“Only run jobs when I am away from my
desk and never run jobs owned by Bob.” |
Upgrade to Condor-G
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A Grid-enabled version of Condor that
provides robust job management for Globus. |
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Robust replacement for globusrun |
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Provides extensive fault-tolerance |
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Brings Condor’s job management features
to Globus jobs |
What Have We Done on the
Grid Already?
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Example: NUG30 |
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quadratic assignment problem |
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30 facilities, 30 locations |
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minimize cost of transferring materials
between them |
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posed in 1968 as challenge, long
unsolved |
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but with a good pruning algorithm &
high-throughput computing... |
NUG30 Solved on the Grid
with Condor + Globus
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Resource simultaneously utilized: |
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the Origin 2000 (through LSF ) at NCSA. |
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the Chiba City Linux cluster at Argonne |
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the SGI Origin 2000 at Argonne. |
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the main Condor pool at Wisconsin (600
processors) |
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the Condor pool at Georgia Tech (190
Linux boxes) |
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the Condor pool at UNM (40 processors) |
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the Condor pool at Columbia (16
processors) |
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the Condor pool at Northwestern (12
processors) |
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the Condor pool at NCSA (65 processors) |
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the Condor pool at INFN (200
processors) |
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NUG30 - Solved!!!
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Sender: goux@dantec.ece.nwu.edu
Subject: Re: Let the festivities begin. |
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Hi dear Condor Team, |
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you all have been amazing. NUG30
required 10.9 years of Condor Time.
In just seven days ! |
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More stats tomorrow !!! We are off
celebrating ! |
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condor rules ! |
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cheers, |
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JP. |
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The Idea
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Computing power
is everywhere,
we try to make it usable by anyone. |
Meet Frieda.
Frieda’s Application …
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Simulate the behavior of F(x,y,z) for
20 values of x, 10 values of y and 3 values of z (20*10*3 = 600 combinations) |
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F takes on the average 3 hours to
compute on a “typical” workstation (total = 1800 hours) |
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F requires a “moderate” (128MB) amount
of memory |
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F performs “moderate” I/O - (x,y,z) is
5 MB and F(x,y,z) is 50 MB |
I have 600
simulations to run.
Where can I get help?
Slide 18
Installing Condor
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Download Condor for your operating
system |
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Available as a free download from |
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http://www.cs.wisc.edu/condor |
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Stable –vs- Developer Releases |
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Naming scheme similar to the Linux
Kernel… |
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Available for most Unix platforms and
Windows NT |
So Frieda Installs Personal
Condor on her machine…
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What do we mean by a “Personal” Condor? |
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Condor on your own workstation, no root
access required, no system administrator intervention needed |
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So after installation, Frieda submits
her jobs to her Personal Condor… |
Slide 21
Personal
Condor?!
What’s the benefit of a Condor “Pool” with just one user and one machine?
Your Personal Condor will
...
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… keep an eye on your jobs and will
keep you posted on their progress |
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… implement your policy on the
execution order of the jobs |
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… keep a log of your job activities |
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… add fault tolerance to your jobs |
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… implement your policy on when the
jobs can run on your workstation |
Getting Started: Submitting
Jobs to Condor
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Choosing a “Universe” for your job |
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Just use VANILLA for now |
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Make your job “batch-ready” |
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Creating a submit description file |
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Run condor_submit on your submit
description file |
Making your job batch-ready
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Must be able to run in the background:
no interactive input, windows, GUI, etc. |
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Can still use STDIN, STDOUT, and STDERR
(the keyboard and the screen), but files are used for these instead of the
actual devices |
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Organize data files |
Creating a Submit
Description File
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A plain ASCII text file |
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Tells Condor about your job: |
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Which executable, universe, input,
output and error files to use, command-line arguments, environment variables,
any special requirements or preferences (more on this later) |
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Can describe many jobs at once (a
“cluster”) each with different input, arguments, output, etc. |
Simple Submit Description
File
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# Simple condor_submit input file |
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# (Lines beginning with # are comments) |
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# NOTE: the words on the left side are
not |
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#
case sensitive, but filenames are! |
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Universe = vanilla |
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Executable = my_job |
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Queue |
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Running condor_submit
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You give condor_submit the name of the
submit file you have created |
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condor_submit parses the file, checks
for errors, and creates a “ClassAd” that describes your job(s) |
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Sends your job’s ClassAd(s) and
executable to the condor_schedd, which stores the job in its queue |
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Atomic operation, two-phase commit |
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View the queue with condor_q |
Running condor_submit
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% condor_submit my_job.submit-file |
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Submitting job(s). |
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1 job(s) submitted to cluster 1. |
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% condor_q |
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-- Submitter: perdita.cs.wisc.edu :
<128.105.165.34:1027> : |
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ID OWNER SUBMITTED RUN_TIME ST PRI SIZE CMD |
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1.0 frieda 6/16 06:52 0+00:00:00 I 0 0.0 my_job |
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1 jobs; 1 idle, 0 running, 0 held |
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% |
Another Submit Description
File
“Clusters” and “Processes”
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If your submit file describes multiple
jobs, we call this a “cluster” |
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Each job within a cluster is called a
“process” or “proc” |
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If you only specify one job, you still
get a cluster, but it has only one process |
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A Condor “Job ID” is the cluster
number, a period, and the process number (“23.5”) |
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Process numbers always start at 0 |
Example Submit Description
File for a Cluster
Slide 33
Submit Description File for
a BIG Cluster of Jobs
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Specify initial directory for each job
is specified with the $(Process) macro, and instead of submitting a single
job, we use “Queue 600” to submit 600 jobs at once |
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$(Process) will be expanded to the
process number for each job in the cluster (from 0 up to 599 in this case),
so we’ll have “run_0”, “run_1”, … “run_599” directories |
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All the input/output files will be in
different directories! |
Submit Description File for
a BIG Cluster of Jobs
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# Example condor_submit input file that
defines |
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# a cluster of 600 jobs with different
iwd |
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Universe = vanilla |
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Executable = my_job |
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Arguments = -arg1 –arg2 |
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InitialDir = run_$(Process) |
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Queue 600 |
Using condor_rm
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If you want to remove a job from the
Condor queue, you use condor_rm |
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You can only remove jobs that you own
(you can’t run condor_rm on someone else’s jobs unless you are root) |
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You can give specific job ID’s (cluster
or cluster.proc), or you can remove all of your jobs with the “-a” option. |
Temporarily halt a Job
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Use condor_hold to place a job on hold |
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Kills job if currently running |
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Will not attempt to restart job until
released |
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Use condor_release to remove a hold and
permit job to be scheduled again |
Using condor_history
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Once your job completes, it will no
longer show up in condor_q |
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You can use condor_history to view
information about a completed job |
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The status field (“ST”) will have
either a “C” for “completed”, or an “X” if the job was removed with condor_rm |
Getting Email from Condor
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By default, Condor will send you email
when your jobs completes |
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With lots of information about the run |
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If you don’t want this email, put this
in your submit file: |
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notification = never |
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If you want email every time something
happens to your job (preempt, exit, etc), use this: |
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notification = always |
Getting Email from Condor
(cont’d)
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If you only want email in case of
errors, use this: |
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notification = error |
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By default, the email is sent to your
account on the host you submitted from.
If you want the email to go to a different address, use this: |
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notify_user = email@address.here |
A Job’s life story: The
“User Log” file
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A UserLog must be specified in your
submit file: |
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Log = filename |
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You get a log entry for everything that
happens to your job: |
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When it was submitted, when it starts
executing, preempted, restarted, completes, if there are any problems, etc. |
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Very useful! Highly recommended! |
Sample Condor User Log
Uses for the User Log
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Easily read by human or machine |
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C++ library and Perl Module for parsing UserLogs is available |
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Event triggers for meta-schedulers |
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Like DagMan… |
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Visualizations of job progress |
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Condor JobMonitor Viewer |
Condor
JobMonitor
Screenshot
Job Priorities w/
condor_prio
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condor_prio allows you to specify the
order in which your jobs are started |
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Higher the prio #, the earlier the job
will start |
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% condor_q |
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-- Submitter: perdita.cs.wisc.edu :
<128.105.165.34:1027> : |
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ID OWNER SUBMITTED RUN_TIME ST PRI SIZE CMD |
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1.0 frieda 6/16 06:52 0+00:02:11 R 0 0.0 my_job |
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% condor_prio +5 1.0 |
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% condor_q |
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-- Submitter: perdita.cs.wisc.edu :
<128.105.165.34:1027> : |
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ID OWNER SUBMITTED RUN_TIME ST PRI SIZE CMD |
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1.0 frieda 6/16 06:52 0+00:02:13 R 5 0.0 my_job |
Want other Scheduling
possibilities?
Extend with the Scheduler Universe
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In addition to VANILLA, another job
universe is the Scheduler Universe. |
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Scheduler Universe jobs run on the
submitting machine and serve as a meta-scheduler. |
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DAGMan meta-scheduler included |
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DAGMan
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Directed Acyclic Graph Manager |
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DAGMan allows you to specify the dependencies
between your Condor jobs, so it can manage them automatically for you. |
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(e.g., “Don’t run job “B” until job “A”
has completed successfully.”) |
What is a DAG?
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A DAG is the data structure used by
DAGMan to represent these dependencies. |
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Each job is a “node” in the DAG. |
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Each node can have any number of
“parent” or “children” nodes – as long as there are no loops! |
Defining a DAG
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A DAG is defined by a .dag file,
listing each of its nodes and their dependencies: |
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# diamond.dag |
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Job A a.sub |
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Job B b.sub |
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Job C c.sub |
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Job D d.sub |
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Parent A Child B C |
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Parent B C Child D |
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each node will run the Condor job
specified by its accompanying Condor submit file |
Submitting a DAG
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To start your DAG, just run condor_submit_dag
with your .dag file, and Condor will start a personal DAGMan daemon which to
begin running your jobs: |
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% condor_submit_dag diamond.dag |
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condor_submit_dag submits a Scheduler Universe Job with
DAGMan as the executable. |
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Thus the DAGMan daemon itself runs as a
Condor job, so you don’t have to baby-sit it. |
Running a DAG
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DAGMan acts as a “meta-scheduler”,
managing the submission of your jobs to Condor based on the DAG dependencies. |
Running a DAG (cont’d)
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DAGMan holds & submits jobs to the
Condor queue at the appropriate times. |
Running a DAG (cont’d)
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In case of a job failure, DAGMan
continues until it can no longer make progress, and then creates a “rescue”
file with the current state of the DAG. |
Recovering a DAG
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Once the failed job is ready to be
re-run, the rescue file can be used to restore the prior state of the DAG. |
Recovering a DAG (cont’d)
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Once that job completes, DAGMan will
continue the DAG as if the failure never happened. |
Finishing a DAG
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Once the DAG is complete, the DAGMan
job itself is finished, and exits. |
Additional DAGMan Features
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Provides other handy features for job
management… |
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nodes can have PRE & POST scripts |
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failed nodes can be automatically
re-tried a configurable number of times |
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job submission can be “throttled” |
We’ve seen how Condor will
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… keep an eye on your jobs and will
keep you posted on their progress |
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… implement your policy on the
execution order of the jobs |
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… keep a log of your job activities |
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… add fault tolerance to your jobs ? |
What if each job needed to
run for 20 days?
What if I wanted to interrupt a job with a higher priority job?
Condor’s Standard Universe
to the rescue!
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Condor can support various combinations
of features/environments in different “Universes” |
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Different Universes provide different
functionality for your job: |
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Vanilla – Run any Serial Job |
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Scheduler – Plug in a meta-scheduler |
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Standard – Support for transparent
process checkpoint and restart |
Process Checkpointing
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Condor’s Process Checkpointing
mechanism saves all the state of a process into a checkpoint file |
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Memory, CPU, I/O, etc. |
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The process can then be restarted from
right where it left off |
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Typically no changes to your job’s
source code needed – however, your job must be relinked with Condor’s
Standard Universe support library |
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Relinking Your Job for
submission to the
Standard Universe
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To do this, just place “condor_compile”
in front of the command you normally use to link your job: |
Limitations in the
Standard Universe
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Condor’s checkpointing is not at the
kernel level. Thus in the Standard
Universe the job may not |
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Fork() |
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Use kernel threads |
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Use some forms of IPC, such as pipes
and shared memory |
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Many typical scientific jobs are OK |
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When will Condor checkpoint
your job?
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Periodically, if desired |
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For fault tolerance |
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To free the machine to do a higher
priority task (higher priority job, or a job from a user with higher
priority) |
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Preemptive-resume scheduling |
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When you explicitly run condor_checkpoint,
condor_vacate, condor_off or condor_restart command |
What Condor Daemons are
running on my machine, and what do they do?
Condor Daemon Layout
condor_master
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Starts up all other Condor daemons |
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If there are any problems and a daemon
exits, it restarts the daemon and sends email to the administrator |
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Checks the time stamps on the binaries
of the other Condor daemons, and if new binaries appear, the master will
gracefully shutdown the currently running version and start the new version |
condor_master (cont’d)
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Acts as the server for many Condor
remote administration commands: |
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condor_reconfig, condor_restart,
condor_off, condor_on, condor_config_val, etc. |
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condor_startd
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Represents a machine to the Condor
system |
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Responsible for starting, suspending,
and stopping jobs |
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Enforces the wishes of the machine
owner (the owner’s “policy”… more on this soon) |
condor_schedd
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Represents users to the Condor system |
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Maintains the persistent queue of jobs |
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Responsible for contacting available
machines and sending them jobs |
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Services user commands which manipulate
the job queue: |
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condor_submit,condor_rm, condor_q,
condor_hold, condor_release, condor_prio, … |
condor_collector
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Collects information from all other
Condor daemons in the pool |
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“Directory Service” / Database for a
Condor pool |
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Each daemon sends a periodic update
called a “ClassAd” to the collector |
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Services queries for information: |
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Queries from other Condor daemons |
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Queries from users (condor_status) |
condor_negotiator
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Performs “matchmaking” in Condor |
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Gets information from the collector
about all available machines and all idle jobs |
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Tries to match jobs with machines that
will serve them |
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Both the job and the machine must
satisfy each other’s requirements |
Happy Day! Frieda’s organization purchased a Beowulf
Cluster!
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Frieda Installs Condor on all the
dedicated Cluster nodes, and configures them with her machine as the central
manager… |
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Now her Condor Pool can run multiple
jobs at once |
Slide 74
Layout of the Condor Pool
condor_status
Frieda tries out parallel
jobs…
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MPI Universe & PVM Universe |
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Schedule and start an MPICH job on
dedicated resources |
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Executable = my-mpi-job |
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Universe = MPI |
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Machine_count = 8 |
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queue |
The Boss says Frieda can add
her
co-workers’ desktop machines into her Condor pool as well…
but only if they can also submit jobs.
Layout of the Condor Pool
Some of the machines in the
Pool do not have enough memory or scratch disk space to run my job!
Specify Requirements!
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An expression (syntax similar to C or
Java) |
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Must evaluate to True for a match to be
made |
Specify Rank!
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All matches which meet the requirements
can be sorted by preference with a Rank expression. |
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Higher the Rank, the better the match |
How can my jobs access their
data files?
Access to Data in Condor
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Use Shared Filesystem if available |
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No shared filesystem? |
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Condor can transfer files |
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Automatically send back changed files |
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Atomic transfer of multiple files |
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Standard Universe can use Remote System
Calls |
Remote System Calls
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I/O System calls trapped and sent back
to submit machine |
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Allows Transparent Migration Across
Administrative Domains |
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Checkpoint on machine A, restart on B |
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No Source Code changes required |
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Language Independent |
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Opportunities for Application Steering |
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Example: Condor tells customer process
“how” to open files |
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Job Startup
condor_q -io
I am adding nodes to the
Cluster… but the Engineering Department has priority on these nodes.
The Machine (Startd) Policy
Expressions
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START – When is this machine willing to
start a job |
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RANK
- Job Preferences |
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SUSPEND - When to suspend a job |
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CONTINUE - When to continue a suspended job |
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PREEMPT – When to nicely stop running a
job |
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KILL
- When to immediately kill a preempting job |
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Freida’s Current Settings
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START = True |
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RANK
= |
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SUSPEND = False |
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CONTINUE = |
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PREEMPT = False |
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KILL
= False |
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Freida’s New Settings for
the Chemistry nodes
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START = True |
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RANK
= Department == “Chemistry” |
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SUSPEND = False |
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CONTINUE = |
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PREEMPT = False |
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KILL
= False |
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Submit file with Custom
Attribute
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Executable = charm-run |
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Universe = standard |
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+Department = Chemistry |
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queue |
What if “Department” not
specified?
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START = True |
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RANK
= Department =!= UNDEFINED && Department == “Chemistry” |
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SUSPEND = False |
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CONTINUE = |
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PREEMPT = False |
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KILL
= False |
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Another example
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START = True |
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RANK
= Department =!= UNDEFINED && ((Department == “Chemistry”)*2 +
Department == “Physics”) |
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SUSPEND = False |
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CONTINUE = |
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PREEMPT = False |
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KILL
= False |
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The Cluster is fine. But not the desktop machines. Condor can only use the desktops when they
would otherwise be idle.
So Frieda decides she wants
the desktops to:
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START jobs when their has been no
activity on the keyboard/mouse for 5 minutes and the load average is low |
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SUSPEND jobs as soon as activity is
detected |
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PREEMPT jobs if the activity continues
for 5 minutes or more |
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KILL jobs if they take more than 5
minutes to preempt |
Macros in the Config File
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NonCondorLoadAvg = (LoadAvg -
CondorLoadAvg) |
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BackgroundLoad = 0.3 |
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HighLoad = 0.5 |
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KeyboardBusy = (KeyboardIdle < 10) |
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CPU_Busy = ($(NonCondorLoadAvg) >=
$(HighLoad)) |
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MachineBusy = ($(CPU_Busy) ||
$(KeyboardBusy)) |
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ActivityTimer = (CurrentTime -
EnteredCurrentActivity) |
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Desktop Machine Policy
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START = $(CPU_Idle) &&
KeyboardIdle > 300 |
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SUSPEND = $(MachineBusy) |
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CONTINUE = $(CPU_Idle) &&
KeyboardIdle > 120 |
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PREEMPT = (Activity ==
"Suspended") &&
$(ActivityTimer) > 300 |
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KILL = $(ActivityTimer) > 300 |
Policy Review
|
|
|
Users submitting jobs can specify
Requirements and Rank expressions |
|
Administrators can specify Startd
Policy expressions individually for each machine (Start,Suspend,etc) |
|
Expressions can use any job or machine
ClassAd attribute |
|
Custom attributes easily added |
|
Bottom Line: Enforce almost any policy! |
General User Commands
|
|
|
condor_status View Pool Status |
|
condor_q View Job Queue |
|
condor_submit Submit new Jobs |
|
condor_rm Remove Jobs |
|
condor_prio Intra-User Prios |
|
condor_history Completed Job
Info |
|
condor_submit_dag Specify
Dependencies |
|
condor_checkpoint Force a
checkpoint |
|
condor_compile Link Condor
library |
Administrator Commands
|
|
|
condor_vacate Leave a machine
now |
|
condor_on Start Condor |
|
condor_off Stop Condor |
|
condor_reconfig Reconfig
on-the-fly |
|
condor_config_val View/set
config |
|
condor_userprio User Priorities |
|
condor_stats View detailed
usage accounting stats |
CondorView Usage Graph
Back to the
Story:
Disaster Strikes!
Frieda Goes to the Grid!
|
|
|
First Frieda takes advantage of her
Condor friends! |
|
She knows people with their own Condor
pools, and gets permission to access their resources |
|
She then configures her Condor pool to
“flock” to these pools |
Slide 105
How Flocking Works
|
|
|
|
Add a line to your condor_config : |
|
FLOCK_HOSTS = Pool-Foo, Pool-Bar |
Condor Flocking
|
|
|
|
Remote pools are contacted in the order
specified until jobs are satisfied |
|
The list of remote pools is a property
of the Schedd, not the Central Manager |
|
So different users can Flock to
different pools |
|
And remote pools can allow specific
users |
|
User-priority system is
“flocking-aware” |
|
A pool’s local users can have priority
over remote users “flocking” in. |
Condor Flocking, cont.
|
|
|
|
Flocking is “Condor” specific
technology… |
|
Frieda also has access to Globus
resources she wants to use |
|
She has certificates and access to
Globus gatekeepers at remote institutions |
|
But Frieda wants Condor’s queue
management features for her Globus jobs! |
|
She installs Condor-G so she can submit
“Globus Universe” jobs to Condor |
Condor-G: Globus + Condor
|
|
|
Globus |
|
middleware deployed across entire Grid |
|
remote access to computational
resources |
|
dependable, robust data transfer |
|
Condor |
|
job scheduling across multiple
resources |
|
strong fault tolerance with
checkpointing and migration |
|
layered over Globus as “personal batch
system” for the Grid |
Condor-G Installation: Tell
it what you need…
… and watch it go!
Frieda Submits a Globus
Universe Job
|
|
|
|
In her submit description file, she
specifies: |
|
Universe = Globus |
|
Which Globus Gatekeeper to use |
|
Optional: Location of file containing
your Globus certificate (thanks, Massimo!) |
|
|
|
universe = globus |
|
globusscheduler =
beak.cs.wisc.edu/jobmanager |
|
executable = progname |
|
queue |
How It Works
How It Works
How It Works
How It Works
How It Works
Condor Globus Universe
Globus Universe Concerns
|
|
|
|
|
What about Fault Tolerance? |
|
Local Crashes |
|
What if the submit machine goes down? |
|
Network Outages |
|
What if the connection to the remote
Globus jobmanager is lost? |
|
Remote Crashes |
|
What if the remote Globus jobmanager
crashes? |
|
What if the remote machine goes down? |
Changes to the Globus
JobManager for Fault Tolerance
|
|
|
Ability to restart a JobManager |
|
Enhanced two-phase commit submit
protocol |
Globus Universe
Fault-Tolerance: Submit-side Failures
|
|
|
All relevant state for each submitted
job is stored persistently in the Condor job queue. |
|
This persistent information allows the
Condor GridManager upon restart to read the state information and reconnect
to JobManagers that were running at the time of the crash. |
|
If a JobManager fails to respond… |
Globus Universe
Fault-Tolerance:
Lost Contact with Remote Jobmanager
Globus Universe
Fault-Tolerance: Credential Management
|
|
|
Authentication in Globus is done with
limited-lifetime X509 proxies |
|
Proxy may expire before jobs finish
executing |
|
Condor can put jobs on hold and email
user to refresh proxy |
|
Todo: Interface with MyProxy… |
But Frieda Wants More…
|
|
|
|
She wants to run standard universe jobs
on Globus-managed resources |
|
For matchmaking and dynamic scheduling
of jobs |
|
For job checkpointing and migration |
|
For remote system calls |
|
|
Solution: Condor GlideIn
|
|
|
Frieda can use the Globus Universe to
run Condor daemons on Globus resources |
|
When the resources run these GlideIn
jobs, they will temporarily join her Condor Pool |
|
She can then submit Standard, Vanilla,
PVM, or MPI Universe jobs and they will be matched and run on the Globus
resources |
How It Works
How It Works
How It Works
How It Works
How It Works
How It Works
How It Works
Slide 133
GlideIn Concerns
|
|
|
|
What if a Globus resource kills my
GlideIn job? |
|
That resource will disappear from your
pool and your jobs will be rescheduled on other machines |
|
Standard universe jobs will resume from
their last checkpoint like usual |
|
What if all my jobs are completed
before a GlideIn job runs? |
|
If a GlideIn Condor daemon is not
matched with a job in 10 minutes, it terminates, freeing the resource |
Common Questions, cont.
|
|
|
My Personal Condor is flocking with a
bunch of Solaris machines, and also doing a GlideIn to a Silicon Graphics
O2K. I do not want to statically
partition my jobs. |
In Review
|
|
|
|
With Condor Frieda can… |
|
… manage her compute job workload |
|
… access local machines |
|
… access remote Condor Pools via
flocking |
|
… access remote compute resources on
the Grid via Globus Universe jobs |
|
… carve out her own personal Condor
Pool from the Grid with GlideIn technology |
Slide 137
Case Study: CMS Production
|
|
|
|
|
An ongoing collaboration between: |
|
Physicists & Computer Scientists |
|
Vladimir Litvin (Caltech CMS) |
|
Scott Koranda, Bruce Loftis, John Towns
(NCSA) |
|
Miron Livny, Peter Couvares, Todd
Tannenbaum, Jamie Frey (UW-Madison Condor) |
|
Software |
|
Condor, Globus, CMS |
CMS Physics
|
|
|
|
The CMS detector at the LHC will probe
fundamental forces in our Universe and search for the yet-undetected Higgs
Boson |
|
|
|
Detector expected to come online 2006 |
CMS Physics
ENORMOUS Data Challenges
Ahead
|
|
|
One sec of CMS running will equal data
volume equivalent to 10,000 Encyclopaedia Britannicas |
|
Data rate handled by the CMS event
builder (~500 Gbit/s) will be equivalent to amount of data currently
exchanged by the world's telecom networks |
|
Number of processors in the CMS event
filter will equal number of workstations at CERN today (~4000) |
Leveraging Grid Resources
|
|
|
The Caltech CMS group is using Grid
resources today for detector simulation and data processing prototyping |
|
|
|
Even during this simulation and
prototyping phase the computational and data challenges are substantial… |
Challenges of a CMS Run
|
|
|
|
CMS run naturally divided into two
phases |
|
Specific challenges |
|
each run generates ~100 GB of data to
be moved and archived elsewhere |
|
many, many runs necessary |
|
simulation & reconstruction jobs at
different sites |
|
this can require major human effort
starting & monitoring jobs, moving data |
CMS Run on the Grid
|
|
|
Caltech CMS staff prepares input files
on local workstation |
|
Pushes “one button” to submit a DAGMan
job to Condor |
|
DAGMan job at Caltech submits secondary
DAGMan job to UW Condor pool (~700 CPUs) |
|
Input files transferred by Condor to UW
pool using Globus GASS file transfer |
CMS Run on the Grid
|
|
|
|
Secondary DAGMan job launches 100 Monte
Carlo jobs on Wisconsin Condor pool |
|
each job runs 12~24 hours |
|
each generates ~1GB data |
|
Condor handles checkpointing &
migration |
|
no staff intervention |
CMS Run on the Grid
|
|
|
|
When each Monte Carlo job completes,
data automatically transferred to UniTree at NCSA by a POST script |
|
each file ~ 1 GB |
|
transferred by calling Globus-enabled
FTP client “gsiftp” |
|
NCSA UniTree runs Globus-enabled FTP
server |
|
authentication to FTP server on user’s
behalf using digital certificate |
|
|
CMS Run on the Grid
|
|
|
|
When all Monte Carlo jobs complete,
Condor DAGMan at UW reports success to DAGMan at Caltech |
|
DAGMan at Caltech submits another
Globus-universe job to Condor to stage data from NCSA UniTree to NCSA Linux
cluster |
|
data transferred using Globus-enabled
FTP |
|
authentication on user’s behalf using
digital certificate |
CMS Run on the Grid
|
|
|
|
Condor DAGMan at Caltech launches
physics reconstruction jobs on NCSA Linux cluster |
|
job launched via Globus jobmanager on
NCSA cluster |
|
no user intervention required |
|
authentication on user’s behalf using
digital certificate |
|
|
|
|
|
|
CMS Run on the Grid
|
|
|
|
When reconstruction jobs at NCSA
complete, data automatically archived to NCSA UniTree |
|
data transferred using Globus-enabled
FTP |
|
After data transferred, DAGMan run is
complete, and Condor at Caltech emails notification to staff |
|
|
|
|
|
|
CMS Run Details
|
|
|
Condor + Globus |
|
allows Condor to submit jobs to remote
host via a Globus jobmanager |
|
any Globus-enabled host reachable (with
authorization) |
|
Condor jobs run in the “Globus”
universe |
|
use familiar Condor classads for
submitting jobs |
CMS Run Details
|
|
|
At Caltech, DAGMan ensures
reconstruction job B runs only after simulation job A completes successfully
& data is transferred |
|
At UW, no job dependencies, but DAGMan
POST scripts used to stage out data |
Future Directions
|
|
|
|
Include additional sites in both steps: |
|
allow Monte Carlo jobs at Wisconsin to
“glide-in” to Grid sites not running Condor |
|
add path so that physics reconstruction
jobs may run on other sites in addition to NCSA cluster |
Slide 153
Thank you!
|
|
|
Check us out on the Web: |
|
http://www.cs.wisc.edu/condor |
|
|
|
Email: |
|
condor-admin@cs.wisc.edu |